Data Standards for Omics Data: The Basis of Data Sharing and Reuse

Stephen A. Chervitz; Eric W. Deutsch; Dawn Field; Helen Parkinson; John Quackenbush; Phillipe Rocca-Serra; Susanna Assunta Sansone; Christian J. Stoeckert; Chris F. Taylor; Ronald Taylor; Catherine A. Ball

doi:10.1007/978-1-61779-027-0_2

Data Standards for Omics Data: The Basis of Data Sharing and Reuse

Stephen A. Chervitz, Eric W. Deutsch, Dawn Field, Helen Parkinson, John Quackenbush, Phillipe Rocca-Serra, Susanna Assunta Sansone, Christian J. Stoeckert, Chris F. Taylor, Ronald Taylor, Catherine A. Ball

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

76 Citations (Scopus)

Abstract

To facilitate sharing of Omics data, many groups of scientists have been working to establish the relevant data standards. The main components of data sharing standards are experiment description standards, data exchange standards, terminology standards, and experiment execution standards. Here we provide a survey of existing and emerging standards that are intended to assist the free and open exchange of large-format data.

Original language	English
Title of host publication	Methods in Molecular Biology
Publisher	Humana Press Inc.
Pages	31-69
Number of pages	39
DOIs	https://doi.org/10.1007/978-1-61779-027-0_2
Publication status	Published - 1 Jan 2011
Externally published	Yes

Publication series

Name	Methods in Molecular Biology
Volume	719
ISSN (Print)	1064-3745
ISSN (Electronic)	1940-6029

Keywords

Data exchange
Data format
Data sharing
Data standards
MGED
MIAME
Metabolomics
Microarray
Ontology
Proteomics

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10.1007/978-1-61779-027-0_2

Cite this

Chervitz, S. A., Deutsch, E. W., Field, D., Parkinson, H., Quackenbush, J., Rocca-Serra, P., Sansone, S. A., Stoeckert, C. J., Taylor, C. F., Taylor, R., & Ball, C. A. (2011). Data Standards for Omics Data: The Basis of Data Sharing and Reuse. In Methods in Molecular Biology (pp. 31-69). (Methods in Molecular Biology; Vol. 719). Humana Press Inc.. https://doi.org/10.1007/978-1-61779-027-0_2

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AU - Parkinson, Helen

AU - Quackenbush, John

AU - Rocca-Serra, Phillipe

AU - Sansone, Susanna Assunta

AU - Stoeckert, Christian J.

AU - Taylor, Chris F.

AU - Taylor, Ronald

AU - Ball, Catherine A.

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KW - Metabolomics

KW - Microarray

KW - Ontology

KW - Proteomics

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Data Standards for Omics Data: The Basis of Data Sharing and Reuse

Abstract

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Keywords

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