Proceedings of the EuBIC-MS 2020 Developers’ Meeting

Christopher Ashwood; Wout Bittremieux; Eric W. Deutsch; Nadezhda T. Doncheva; Viktoria Dorfer; Ralf Gabriels; Vladimir Gorshkov; Surya Gupta; Andrew R. Jones; Lukas Käll; Dominik Kopczynski; Lydie Lane; Ludwig Lautenbacher; Marc Legeay; Marie Locard-Paulet; Bart Mesuere; Yasset Perez-Riverol; Eugen Netz; Julianus Pfeuffer; Timo Sachsenberg; Renee Salz; Patroklos Samaras; Henning Schiebenhoefer; Tobias Schmidt; Veit Schwämmle; Alessio Soggiu; Julian Uszkoreit; Tim Van Den Bossche; Bart Van Puyvelde; Joeri Van Strien; Pieter Verschaffelt; Henry Webel; Sander Willems

doi:10.1016/j.euprot.2020.11.001

Proceedings of the EuBIC-MS 2020 Developers’ Meeting

Christopher Ashwood, Wout Bittremieux, Eric W. Deutsch, Nadezhda T. Doncheva, Viktoria Dorfer, Ralf Gabriels, Vladimir Gorshkov, Surya Gupta, Andrew R. Jones, Lukas Käll, Dominik Kopczynski, Lydie Lane, Ludwig Lautenbacher, Marc Legeay, Marie Locard-Paulet, Bart Mesuere, Yasset Perez-Riverol, Eugen Netz, Julianus Pfeuffer, Timo SachsenbergRenee Salz, Patroklos Samaras, Henning Schiebenhoefer, Tobias Schmidt, Veit Schwämmle, Alessio Soggiu, Julian Uszkoreit, Tim Van Den Bossche, Bart Van Puyvelde, Joeri Van Strien, Pieter Verschaffelt, Henry Webel, Sander Willems

Research output: Contribution to journal › Article › peer-review

6 Citations (Scopus)

Abstract

The 2020 European Bioinformatics Community for Mass Spectrometry (EuBIC-MS) Developers’ meeting was held from January 13^th to January 17^th 2020 in Nyborg, Denmark. Among the participants were scientists as well as developers working in the field of computational mass spectrometry (MS) and proteomics. The 4-day program was split between introductory keynote lectures and parallel hackathon sessions. During the latter, the participants developed bioinformatics tools and resources addressing outstanding needs in the community. The hackathons allowed less experienced participants to learn from more advanced computational MS experts, and to actively contribute to highly relevant research projects. We successfully produced several new tools that will be useful to the proteomics community by improving data analysis as well as facilitating future research. All keynote recordings are available on https://doi.org/10.5281/zenodo.3890181.

Original language	English
Pages (from-to)	1-6
Number of pages	6
Journal	EuPA Open Proteomics
Volume	24
DOIs	https://doi.org/10.1016/j.euprot.2020.11.001
Publication status	Published - 1 Dec 2020
Externally published	Yes

Keywords

Benchmark development
Bioinformatics
Computational mass spectrometry
Functional annotations
Mass spectrometry
Metaproteomics
Phosphoproteomics
Predicted spectra
Proteomics
Proteomics graph networks
Spectrum clustering
XIC extraction

Access to Document

10.1016/j.euprot.2020.11.001

Cite this

Ashwood, C., Bittremieux, W., Deutsch, E. W., Doncheva, N. T., Dorfer, V., Gabriels, R., Gorshkov, V., Gupta, S., Jones, A. R., Käll, L., Kopczynski, D., Lane, L., Lautenbacher, L., Legeay, M., Locard-Paulet, M., Mesuere, B., Perez-Riverol, Y., Netz, E., Pfeuffer, J., ... Willems, S. (2020). Proceedings of the EuBIC-MS 2020 Developers’ Meeting. EuPA Open Proteomics, 24, 1-6. https://doi.org/10.1016/j.euprot.2020.11.001

@article{584973951eab449bb34b56a99e97190b,

title = "Proceedings of the EuBIC-MS 2020 Developers{\textquoteright} Meeting",

abstract = "The 2020 European Bioinformatics Community for Mass Spectrometry (EuBIC-MS) Developers{\textquoteright} meeting was held from January 13th to January 17th 2020 in Nyborg, Denmark. Among the participants were scientists as well as developers working in the field of computational mass spectrometry (MS) and proteomics. The 4-day program was split between introductory keynote lectures and parallel hackathon sessions. During the latter, the participants developed bioinformatics tools and resources addressing outstanding needs in the community. The hackathons allowed less experienced participants to learn from more advanced computational MS experts, and to actively contribute to highly relevant research projects. We successfully produced several new tools that will be useful to the proteomics community by improving data analysis as well as facilitating future research. All keynote recordings are available on https://doi.org/10.5281/zenodo.3890181.",

keywords = "Benchmark development, Bioinformatics, Computational mass spectrometry, Functional annotations, Mass spectrometry, Metaproteomics, Phosphoproteomics, Predicted spectra, Proteomics, Proteomics graph networks, Spectrum clustering, XIC extraction",

author = "Christopher Ashwood and Wout Bittremieux and Deutsch, {Eric W.} and Doncheva, {Nadezhda T.} and Viktoria Dorfer and Ralf Gabriels and Vladimir Gorshkov and Surya Gupta and Jones, {Andrew R.} and Lukas K{\"a}ll and Dominik Kopczynski and Lydie Lane and Ludwig Lautenbacher and Marc Legeay and Marie Locard-Paulet and Bart Mesuere and Yasset Perez-Riverol and Eugen Netz and Julianus Pfeuffer and Timo Sachsenberg and Renee Salz and Patroklos Samaras and Henning Schiebenhoefer and Tobias Schmidt and Veit Schw{\"a}mmle and Alessio Soggiu and Julian Uszkoreit and {Van Den Bossche}, Tim and {Van Puyvelde}, Bart and {Van Strien}, Joeri and Pieter Verschaffelt and Henry Webel and Sander Willems",

note = "Publisher Copyright: {\textcopyright} 2020",

year = "2020",

month = dec,

day = "1",

doi = "10.1016/j.euprot.2020.11.001",

language = "English",

volume = "24",

pages = "1--6",

journal = "EuPA Open Proteomics",

issn = "2212-9685",

}

Ashwood, C, Bittremieux, W, Deutsch, EW, Doncheva, NT, Dorfer, V, Gabriels, R, Gorshkov, V, Gupta, S, Jones, AR, Käll, L, Kopczynski, D, Lane, L, Lautenbacher, L, Legeay, M, Locard-Paulet, M, Mesuere, B, Perez-Riverol, Y, Netz, E, Pfeuffer, J, Sachsenberg, T, Salz, R, Samaras, P, Schiebenhoefer, H, Schmidt, T, Schwämmle, V, Soggiu, A, Uszkoreit, J, Van Den Bossche, T, Van Puyvelde, B, Van Strien, J, Verschaffelt, P, Webel, H & Willems, S 2020, 'Proceedings of the EuBIC-MS 2020 Developers’ Meeting', EuPA Open Proteomics, vol. 24, pp. 1-6. https://doi.org/10.1016/j.euprot.2020.11.001

TY - JOUR

T1 - Proceedings of the EuBIC-MS 2020 Developers’ Meeting

AU - Ashwood, Christopher

AU - Bittremieux, Wout

AU - Deutsch, Eric W.

AU - Doncheva, Nadezhda T.

AU - Dorfer, Viktoria

AU - Gabriels, Ralf

AU - Gorshkov, Vladimir

AU - Gupta, Surya

AU - Jones, Andrew R.

AU - Käll, Lukas

AU - Kopczynski, Dominik

AU - Lane, Lydie

AU - Lautenbacher, Ludwig

AU - Legeay, Marc

AU - Locard-Paulet, Marie

AU - Mesuere, Bart

AU - Perez-Riverol, Yasset

AU - Netz, Eugen

AU - Pfeuffer, Julianus

AU - Sachsenberg, Timo

AU - Salz, Renee

AU - Samaras, Patroklos

AU - Schiebenhoefer, Henning

AU - Schmidt, Tobias

AU - Schwämmle, Veit

AU - Soggiu, Alessio

AU - Uszkoreit, Julian

AU - Van Den Bossche, Tim

AU - Van Puyvelde, Bart

AU - Van Strien, Joeri

AU - Verschaffelt, Pieter

AU - Webel, Henry

AU - Willems, Sander

PY - 2020/12/1

Y1 - 2020/12/1

N2 - The 2020 European Bioinformatics Community for Mass Spectrometry (EuBIC-MS) Developers’ meeting was held from January 13th to January 17th 2020 in Nyborg, Denmark. Among the participants were scientists as well as developers working in the field of computational mass spectrometry (MS) and proteomics. The 4-day program was split between introductory keynote lectures and parallel hackathon sessions. During the latter, the participants developed bioinformatics tools and resources addressing outstanding needs in the community. The hackathons allowed less experienced participants to learn from more advanced computational MS experts, and to actively contribute to highly relevant research projects. We successfully produced several new tools that will be useful to the proteomics community by improving data analysis as well as facilitating future research. All keynote recordings are available on https://doi.org/10.5281/zenodo.3890181.

AB - The 2020 European Bioinformatics Community for Mass Spectrometry (EuBIC-MS) Developers’ meeting was held from January 13th to January 17th 2020 in Nyborg, Denmark. Among the participants were scientists as well as developers working in the field of computational mass spectrometry (MS) and proteomics. The 4-day program was split between introductory keynote lectures and parallel hackathon sessions. During the latter, the participants developed bioinformatics tools and resources addressing outstanding needs in the community. The hackathons allowed less experienced participants to learn from more advanced computational MS experts, and to actively contribute to highly relevant research projects. We successfully produced several new tools that will be useful to the proteomics community by improving data analysis as well as facilitating future research. All keynote recordings are available on https://doi.org/10.5281/zenodo.3890181.

KW - Benchmark development

KW - Bioinformatics

KW - Computational mass spectrometry

KW - Functional annotations

KW - Mass spectrometry

KW - Metaproteomics

KW - Phosphoproteomics

KW - Predicted spectra

KW - Proteomics

KW - Proteomics graph networks

KW - Spectrum clustering

KW - XIC extraction

UR - http://www.scopus.com/inward/record.url?scp=85097869720&partnerID=8YFLogxK

U2 - 10.1016/j.euprot.2020.11.001

DO - 10.1016/j.euprot.2020.11.001

M3 - Article

AN - SCOPUS:85097869720

SN - 2212-9685

VL - 24

SP - 1

EP - 6

JO - EuPA Open Proteomics

JF - EuPA Open Proteomics

ER -

Proceedings of the EuBIC-MS 2020 Developers’ Meeting

Abstract

Keywords

Access to Document

Other files and links

Cite this