The Extended Polydimensional Immunome Characterization (EPIC) web-based reference and discovery tool for cytometry data

Joo Guan Yeo; Martin Wasser; Pavanish Kumar; Lu Pan; Su Li Poh; Fauziah Ally; Thaschawee Arkachaisri; Amanda Jin Mei Lim; Jing Yao Leong; Liyun Lai; Kee Thai Yeo; Elene Seck Choon Lee; Camillus Jian Hui Chua; Anis Larbi; Ma Shwe Zin Nyunt; Tze Pin Ng; Sabrina Chiesa; Marco Gattorno; Alberto Martini; Bhairav Suryakant Paleja; Charles Antoine Dutertre; Jinmiao Chen; Katherine Nay Yaung; Swee Ping Tang; Sue Kheng Ng; Chee Fu Yung; Angela Yun June Tan; Shu Ying Lee; Florent Ginhoux; Salvatore Albani

doi:10.1038/s41587-020-0532-1

The Extended Polydimensional Immunome Characterization (EPIC) web-based reference and discovery tool for cytometry data

Joo Guan Yeo, Martin Wasser, Pavanish Kumar, Lu Pan, Su Li Poh, Fauziah Ally, Thaschawee Arkachaisri, Amanda Jin Mei Lim, Jing Yao Leong, Liyun Lai, Kee Thai Yeo, Elene Seck Choon Lee, Camillus Jian Hui Chua, Anis Larbi, Ma Shwe Zin Nyunt, Tze Pin Ng, Sabrina Chiesa, Marco Gattorno, Alberto Martini, Bhairav Suryakant PalejaCharles Antoine Dutertre, Jinmiao Chen, Katherine Nay Yaung, Swee Ping Tang, Sue Kheng Ng, Chee Fu Yung, Angela Yun June Tan, Shu Ying Lee, Florent Ginhoux, Salvatore Albani

Research output: Contribution to journal › Letter › peer-review

29 Citations (Scopus)

Original language	English
Pages (from-to)	679-684
Number of pages	6
Journal	Nature Biotechnology
Volume	38
Issue number	6
DOIs	https://doi.org/10.1038/s41587-020-0532-1
Publication status	Published - 1 Jun 2020
Externally published	Yes

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Yeo, J. G., Wasser, M., Kumar, P., Pan, L., Poh, S. L., Ally, F., Arkachaisri, T., Lim, A. J. M., Leong, J. Y., Lai, L., Yeo, K. T., Lee, E. S. C., Chua, C. J. H., Larbi, A., Nyunt, M. S. Z., Ng, T. P., Chiesa, S., Gattorno, M., Martini, A., ... Albani, S. (2020). The Extended Polydimensional Immunome Characterization (EPIC) web-based reference and discovery tool for cytometry data. Nature Biotechnology, 38(6), 679-684. https://doi.org/10.1038/s41587-020-0532-1

@article{98ea720226fc4affa0e4523ce3b54604,

title = "The Extended Polydimensional Immunome Characterization (EPIC) web-based reference and discovery tool for cytometry data",

author = "Yeo, \{Joo Guan\} and Martin Wasser and Pavanish Kumar and Lu Pan and Poh, \{Su Li\} and Fauziah Ally and Thaschawee Arkachaisri and Lim, \{Amanda Jin Mei\} and Leong, \{Jing Yao\} and Liyun Lai and Yeo, \{Kee Thai\} and Lee, \{Elene Seck Choon\} and Chua, \{Camillus Jian Hui\} and Anis Larbi and Nyunt, \{Ma Shwe Zin\} and Ng, \{Tze Pin\} and Sabrina Chiesa and Marco Gattorno and Alberto Martini and Paleja, \{Bhairav Suryakant\} and Dutertre, \{Charles Antoine\} and Jinmiao Chen and \{Nay Yaung\}, Katherine and Tang, \{Swee Ping\} and Ng, \{Sue Kheng\} and Yung, \{Chee Fu\} and Tan, \{Angela Yun June\} and Lee, \{Shu Ying\} and Florent Ginhoux and Salvatore Albani",

note = "Funding Information: This research is supported by the National Research Foundation Singapore under its NMRC Centre Grant Programme (NMRC/CG/M003/2017) and administered by the Singapore Ministry of Health{\textquoteright}s National Medical Research Council. Other grant support from NMRC (NMRC/TA/0059/2017, NMRC/STaR/020/2013, NMRC/ MOHIAFCAT2/2/08, MOHIAFCAT2/0001/2014, NMRC MOHIAFCAT1-6003, TCR15Jun006, NMRC/ CIRG/ 1460/2016, MH 095:003\textbackslash{}016-0002), Duke-NUS, A*STAR-BMRC (IAF311020) and BMRC (SPF2014/005) is gratefully acknowledged. The pediatric patients were recruited with the strong support of Yew Nam Siow and the Department of Anaesthesia, KK Women{\textquoteright}s and Children{\textquoteright}s Hospital. Testing of EPIC and feedback by Antonio La Cava, Femke van Wijk, Eveline Delemarre, Antonio Bertoletti, Michelle Hong Li Wen, Matthew Kirkey and Rosa Bacchetta are greatly appreciated. We also acknowledge Loshinidevi Thana Bathi for processing the large number of samples used in EPIC.",

year = "2020",

month = jun,

day = "1",

doi = "10.1038/s41587-020-0532-1",

language = "English",

volume = "38",

pages = "679--684",

journal = "Nature Biotechnology",

issn = "1087-0156",

number = "6",

}

Yeo, JG, Wasser, M, Kumar, P, Pan, L, Poh, SL, Ally, F, Arkachaisri, T, Lim, AJM, Leong, JY, Lai, L, Yeo, KT, Lee, ESC, Chua, CJH, Larbi, A, Nyunt, MSZ, Ng, TP, Chiesa, S, Gattorno, M, Martini, A, Paleja, BS, Dutertre, CA, Chen, J, Nay Yaung, K, Tang, SP, Ng, SK, Yung, CF, Tan, AYJ, Lee, SY, Ginhoux, F & Albani, S 2020, 'The Extended Polydimensional Immunome Characterization (EPIC) web-based reference and discovery tool for cytometry data', Nature Biotechnology, vol. 38, no. 6, pp. 679-684. https://doi.org/10.1038/s41587-020-0532-1

TY - JOUR

T1 - The Extended Polydimensional Immunome Characterization (EPIC) web-based reference and discovery tool for cytometry data

AU - Yeo, Joo Guan

AU - Wasser, Martin

AU - Kumar, Pavanish

AU - Pan, Lu

AU - Poh, Su Li

AU - Ally, Fauziah

AU - Arkachaisri, Thaschawee

AU - Lim, Amanda Jin Mei

AU - Leong, Jing Yao

AU - Lai, Liyun

AU - Yeo, Kee Thai

AU - Lee, Elene Seck Choon

AU - Chua, Camillus Jian Hui

AU - Larbi, Anis

AU - Nyunt, Ma Shwe Zin

AU - Ng, Tze Pin

AU - Chiesa, Sabrina

AU - Gattorno, Marco

AU - Martini, Alberto

AU - Paleja, Bhairav Suryakant

AU - Dutertre, Charles Antoine

AU - Chen, Jinmiao

AU - Nay Yaung, Katherine

AU - Tang, Swee Ping

AU - Ng, Sue Kheng

AU - Yung, Chee Fu

AU - Tan, Angela Yun June

AU - Lee, Shu Ying

AU - Ginhoux, Florent

AU - Albani, Salvatore

N1 - Funding Information: This research is supported by the National Research Foundation Singapore under its NMRC Centre Grant Programme (NMRC/CG/M003/2017) and administered by the Singapore Ministry of Health’s National Medical Research Council. Other grant support from NMRC (NMRC/TA/0059/2017, NMRC/STaR/020/2013, NMRC/ MOHIAFCAT2/2/08, MOHIAFCAT2/0001/2014, NMRC MOHIAFCAT1-6003, TCR15Jun006, NMRC/ CIRG/ 1460/2016, MH 095:003\016-0002), Duke-NUS, A*STAR-BMRC (IAF311020) and BMRC (SPF2014/005) is gratefully acknowledged. The pediatric patients were recruited with the strong support of Yew Nam Siow and the Department of Anaesthesia, KK Women’s and Children’s Hospital. Testing of EPIC and feedback by Antonio La Cava, Femke van Wijk, Eveline Delemarre, Antonio Bertoletti, Michelle Hong Li Wen, Matthew Kirkey and Rosa Bacchetta are greatly appreciated. We also acknowledge Loshinidevi Thana Bathi for processing the large number of samples used in EPIC.

PY - 2020/6/1

Y1 - 2020/6/1

UR - http://www.scopus.com/inward/record.url?scp=85085042415&partnerID=8YFLogxK

U2 - 10.1038/s41587-020-0532-1

DO - 10.1038/s41587-020-0532-1

M3 - Letter

C2 - 32440006

AN - SCOPUS:85085042415

SN - 1087-0156

VL - 38

SP - 679

EP - 684

JO - Nature Biotechnology

JF - Nature Biotechnology

IS - 6

ER -

The Extended Polydimensional Immunome Characterization (EPIC) web-based reference and discovery tool for cytometry data

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