The minimum information about a proteomics experiment (MIAPE)

Chris F. Taylor; Norman W. Paton; Kathryn S. Lilley; Pierre Alain Binz; Randall K. Julian; Andrew R. Jones; Weimin Zhu; Rolf Apweiler; Ruedi Aebersold; Eric W. Deutsch; Michael J. Dunn; Albert J.R. Heck; Alexander Leitner; Marcus Macht; Matthias Mann; Lennart Martens; Thomas A. Neubert; Scott D. Patterson; Peipei Ping; Sean L. Seymour; Puneet Souda; Akira Tsugita; Joel Vandekerckhove; Thomas M. Vondriska; Julian P. Whitelegge; Marc R. Wilkins; Ioannnis Xenarios; John R. Yates; Henning Hermjakob

doi:10.1038/nbt1329

The minimum information about a proteomics experiment (MIAPE)

Chris F. Taylor, Norman W. Paton, Kathryn S. Lilley, Pierre Alain Binz, Randall K. Julian, Andrew R. Jones, Weimin Zhu, Rolf Apweiler, Ruedi Aebersold, Eric W. Deutsch, Michael J. Dunn, Albert J.R. Heck, Alexander Leitner, Marcus Macht, Matthias Mann, Lennart Martens, Thomas A. Neubert, Scott D. Patterson, Peipei Ping, Sean L. SeymourPuneet Souda, Akira Tsugita, Joel Vandekerckhove, Thomas M. Vondriska, Julian P. Whitelegge, Marc R. Wilkins, Ioannnis Xenarios, John R. Yates, Henning Hermjakob

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613 Citations (Scopus)

Abstract

Both the generation and the analysis of proteomics data are now widespread, and high-throughput approaches are commonplace. Protocols continue to increase in complexity as methods and technologies evolve and diversify. To encourage the standardized collection, integration, storage and dissemination of proteomics data, the Human Proteome Organization's Proteomics Standards Initiative develops guidance modules for reporting the use of techniques such as gel electrophoresis and mass spectrometry. This paper describes the processes and principles underpinning the development of these modules; discusses the ramifications for various interest groups such as experimentalists, funders, publishers and the private sector; addresses the issue of overlap with other reporting guidelines; and highlights the criticality of appropriate tools and resources in enabling 'MIAPE-compliant' reporting.

Original language	English
Pages (from-to)	887-893
Number of pages	7
Journal	Nature Biotechnology
Volume	25
Issue number	8
DOIs	https://doi.org/10.1038/nbt1329
Publication status	Published - 1 Aug 2007
Externally published	Yes

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Taylor, C. F., Paton, N. W., Lilley, K. S., Binz, P. A., Julian, R. K., Jones, A. R., Zhu, W., Apweiler, R., Aebersold, R., Deutsch, E. W., Dunn, M. J., Heck, A. J. R., Leitner, A., Macht, M., Mann, M., Martens, L., Neubert, T. A., Patterson, S. D., Ping, P., ... Hermjakob, H. (2007). The minimum information about a proteomics experiment (MIAPE). Nature Biotechnology, 25(8), 887-893. https://doi.org/10.1038/nbt1329

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title = "The minimum information about a proteomics experiment (MIAPE)",

abstract = "Both the generation and the analysis of proteomics data are now widespread, and high-throughput approaches are commonplace. Protocols continue to increase in complexity as methods and technologies evolve and diversify. To encourage the standardized collection, integration, storage and dissemination of proteomics data, the Human Proteome Organization's Proteomics Standards Initiative develops guidance modules for reporting the use of techniques such as gel electrophoresis and mass spectrometry. This paper describes the processes and principles underpinning the development of these modules; discusses the ramifications for various interest groups such as experimentalists, funders, publishers and the private sector; addresses the issue of overlap with other reporting guidelines; and highlights the criticality of appropriate tools and resources in enabling 'MIAPE-compliant' reporting.",

author = "Taylor, {Chris F.} and Paton, {Norman W.} and Lilley, {Kathryn S.} and Binz, {Pierre Alain} and Julian, {Randall K.} and Jones, {Andrew R.} and Weimin Zhu and Rolf Apweiler and Ruedi Aebersold and Deutsch, {Eric W.} and Dunn, {Michael J.} and Heck, {Albert J.R.} and Alexander Leitner and Marcus Macht and Matthias Mann and Lennart Martens and Neubert, {Thomas A.} and Patterson, {Scott D.} and Peipei Ping and Seymour, {Sean L.} and Puneet Souda and Akira Tsugita and Joel Vandekerckhove and Vondriska, {Thomas M.} and Whitelegge, {Julian P.} and Wilkins, {Marc R.} and Ioannnis Xenarios and Yates, {John R.} and Henning Hermjakob",

year = "2007",

month = aug,

day = "1",

doi = "10.1038/nbt1329",

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Taylor, CF, Paton, NW, Lilley, KS, Binz, PA, Julian, RK, Jones, AR, Zhu, W, Apweiler, R, Aebersold, R, Deutsch, EW, Dunn, MJ, Heck, AJR, Leitner, A, Macht, M, Mann, M, Martens, L, Neubert, TA, Patterson, SD, Ping, P, Seymour, SL, Souda, P, Tsugita, A, Vandekerckhove, J, Vondriska, TM, Whitelegge, JP, Wilkins, MR, Xenarios, I, Yates, JR & Hermjakob, H 2007, 'The minimum information about a proteomics experiment (MIAPE)', Nature Biotechnology, vol. 25, no. 8, pp. 887-893. https://doi.org/10.1038/nbt1329

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AU - Taylor, Chris F.

AU - Paton, Norman W.

AU - Lilley, Kathryn S.

AU - Binz, Pierre Alain

AU - Julian, Randall K.

AU - Jones, Andrew R.

AU - Zhu, Weimin

AU - Apweiler, Rolf

AU - Aebersold, Ruedi

AU - Deutsch, Eric W.

AU - Dunn, Michael J.

AU - Heck, Albert J.R.

AU - Leitner, Alexander

AU - Macht, Marcus

AU - Mann, Matthias

AU - Martens, Lennart

AU - Neubert, Thomas A.

AU - Patterson, Scott D.

AU - Ping, Peipei

AU - Seymour, Sean L.

AU - Souda, Puneet

AU - Tsugita, Akira

AU - Vandekerckhove, Joel

AU - Vondriska, Thomas M.

AU - Whitelegge, Julian P.

AU - Wilkins, Marc R.

AU - Xenarios, Ioannnis

AU - Yates, John R.

AU - Hermjakob, Henning

PY - 2007/8/1

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AB - Both the generation and the analysis of proteomics data are now widespread, and high-throughput approaches are commonplace. Protocols continue to increase in complexity as methods and technologies evolve and diversify. To encourage the standardized collection, integration, storage and dissemination of proteomics data, the Human Proteome Organization's Proteomics Standards Initiative develops guidance modules for reporting the use of techniques such as gel electrophoresis and mass spectrometry. This paper describes the processes and principles underpinning the development of these modules; discusses the ramifications for various interest groups such as experimentalists, funders, publishers and the private sector; addresses the issue of overlap with other reporting guidelines; and highlights the criticality of appropriate tools and resources in enabling 'MIAPE-compliant' reporting.

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EP - 893

JO - Nature Biotechnology

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IS - 8

ER -

The minimum information about a proteomics experiment (MIAPE)

Abstract

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