TY - JOUR
T1 - The ProteomeXchange consortium in 2020
T2 - Enabling 'big data' approaches in proteomics
AU - Deutsch, Eric W.
AU - Bandeira, Nuno
AU - Sharma, Vagisha
AU - Perez-Riverol, Yasset
AU - Carver, Jeremy J.
AU - Kundu, Deepti J.
AU - García-Seisdedos, David
AU - Jarnuczak, Andrew F.
AU - Hewapathirana, Suresh
AU - Pullman, Benjamin S.
AU - Wertz, Julie
AU - Sun, Zhi
AU - Kawano, Shin
AU - Okuda, Shujiro
AU - Watanabe, Yu
AU - Hermjakob, Henning
AU - Maclean, Brendan
AU - Maccoss, Michael J.
AU - Zhu, Yunping
AU - Ishihama, Yasushi
AU - Vizcaíno, Juan A.
N1 - Publisher Copyright:
© 2019 The Author(s). Published by Oxford University Press on behalf of Nucleic Acids Research.
PY - 2020/1/1
Y1 - 2020/1/1
N2 - The ProteomeXchange (PX) consortium of proteomics resources (http://www.proteomexchange.org) has standardized data submission and dissemination of mass spectrometry proteomics data worldwide since 2012. In this paper, we describe the main developments since the previous update manuscript was published in Nucleic Acids Research in 2017. Since then, in addition to the four PX existing members at the time (PRIDE, PeptideAtlas including the PASSEL resource, MassIVE and jPOST), two new resources have joined PX: iProX (China) and Panorama Public (USA). We first describe the updated submission guidelines, now expanded to include six members. Next, with current data submission statistics, we demonstrate that the proteomics field is now actively embracing public open data policies. At the end of June 2019, more than 14 100 datasets had been submitted to PX resources since 2012, and from those, more than 9 500 in just the last three years. In parallel, an unprecedented increase of data re-use activities in the field, including 'big data' approaches, is enabling novel research and new data resources. At last, we also outline some of our future plans for the coming years.
AB - The ProteomeXchange (PX) consortium of proteomics resources (http://www.proteomexchange.org) has standardized data submission and dissemination of mass spectrometry proteomics data worldwide since 2012. In this paper, we describe the main developments since the previous update manuscript was published in Nucleic Acids Research in 2017. Since then, in addition to the four PX existing members at the time (PRIDE, PeptideAtlas including the PASSEL resource, MassIVE and jPOST), two new resources have joined PX: iProX (China) and Panorama Public (USA). We first describe the updated submission guidelines, now expanded to include six members. Next, with current data submission statistics, we demonstrate that the proteomics field is now actively embracing public open data policies. At the end of June 2019, more than 14 100 datasets had been submitted to PX resources since 2012, and from those, more than 9 500 in just the last three years. In parallel, an unprecedented increase of data re-use activities in the field, including 'big data' approaches, is enabling novel research and new data resources. At last, we also outline some of our future plans for the coming years.
UR - http://www.scopus.com/inward/record.url?scp=85077665144&partnerID=8YFLogxK
U2 - 10.1093/nar/gkz984
DO - 10.1093/nar/gkz984
M3 - Article
C2 - 31686107
AN - SCOPUS:85077665144
SN - 0305-1048
VL - 48
SP - D1145-D1152
JO - Nucleic Acids Research
JF - Nucleic Acids Research
IS - D1
ER -