Using the Human Plasma PeptideAtlas to Study Human Plasma Proteins

Terry Farrah; Eric W. Deutsch; Ruedi Aebersold

doi:10.1007/978-1-61779-068-3_23

Using the Human Plasma PeptideAtlas to Study Human Plasma Proteins

Terry Farrah, Eric W. Deutsch, Ruedi Aebersold

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

25 Citations (Scopus)

Abstract

PeptideAtlas is a web-accessible database of LC–MS/MS shotgun proteomics results from hundreds of experiments conducted in diverse laboratories, with all data processed via a uniform analysis pipeline. A total of 91 experiments on human plasma and serum are included. Using the PeptideAtlas web interface, users can browse and search the Human Plasma PeptideAtlas for identified peptides and identified proteins, view spectra, and select proteotypic peptides. Users can easily view supporting information such as chromosomal mapping, estimated abundances, and sequence alignments. Herein, the reader is instructed in the use of the Human Plasma PeptideAtlas through an illustrated exploration of cytokine receptors in plasma.

Original language	English
Title of host publication	Serum/Plasma Proteomics
Subtitle of host publication	Methods and Protocols
Publisher	Humana Press Inc.
Pages	349-374
Number of pages	26
ISBN (Print)	9781617790676
DOIs	https://doi.org/10.1007/978-1-61779-068-3_23
Publication status	Published - 1 Jan 2011

Publication series

Name	Methods in Molecular Biology
Volume	728
ISSN (Print)	1064-3745
ISSN (Electronic)	1940-6029

Keywords

PeptideAtlas
Plasma

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10.1007/978-1-61779-068-3_23

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Using the Human Plasma PeptideAtlas to Study Human Plasma Proteins

Abstract

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Keywords

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