@inbook{617cfbb410a849eb9a64a639d259d68c,
title = "CHAPTER 13: Trans-Proteomic Pipeline for the Identification, Validation, and Quantification of Proteins",
abstract = "The Trans-Proteomic Pipeline (TPP) is a free and open-source suite of software analysis tools that enable the complete processing of mass spectrometry proteomics data. The tools interoperate via a set of metadata-rich common data formats, and can be used on different operating systems. It scales from use on a single computer with a graphical user interface to thousands of cores on cloud computing platforms or container-based deployments. In this chapter we provide a brief overview of many of the TPP tools, highlighting a set of publicly available tutorials that can help a user become familiar with the various tools in a classroom setting or independently.",
author = "Deutsch, {Eric W.} and Luis Mendoza and Shteynberg, {David D.} and Zhi Sun and Hoopmann, {Michael H.} and Moritz, {Robert L.}",
note = "Publisher Copyright: {\textcopyright} The Royal Society of Chemistry 2020.",
year = "2020",
month = jan,
day = "1",
doi = "10.1039/9781788019880-00333",
language = "English",
series = "New Developments in Mass Spectrometry",
publisher = "Royal Society of Chemistry",
number = "8",
pages = "333--344",
editor = "Robert Winkler",
booktitle = "Lipidomics",
edition = "8",
}