TY - JOUR
T1 - Computation of reliable textural indices from multimodal brain MRI
T2 - Suggestions based on a study of patients with diffuse intrinsic pontine glioma
AU - Goya-Outi, Jessica
AU - Orlhac, Fanny
AU - Calmon, Raphael
AU - Alentorn, Agusti
AU - Nioche, Christophe
AU - Philippe, Cathy
AU - Puget, Stéphanie
AU - Boddaert, Nathalie
AU - Buvat, Irène
AU - Grill, Jacques
AU - Frouin, Vincent
AU - Frouin, Frederique
N1 - Publisher Copyright:
© 2018 Institute of Physics and Engineering in Medicine.
PY - 2018/5/10
Y1 - 2018/5/10
N2 - Few methodological studies regarding widely used textural indices robustness in MRI have been reported. In this context, this study aims to propose some rules to compute reliable textural indices from multimodal 3D brain MRI. Diagnosis and post-biopsy MR scans including T1, post-contrast T1, T2 and FLAIR images from thirty children with diffuse intrinsic pontine glioma (DIPG) were considered. The hybrid white stripe method was adapted to standardize MR intensities. Sixty textural indices were then computed for each modality in different regions of interest (ROI), including tumor and white matter (WM). Three types of intensity binning were compared di: constant bin width and relative bounds; dii : constant number of bins and relative bounds; diii : constant number of bins and absolute bounds. The impact of the volume of the region was also tested within the WM. First, the mean Hellinger distance between patient-based intensity distributions decreased by a factor greater than 10 in WM and greater than 2.5 in gray matter after standardization. Regarding the binning strategy, the ranking of patients was highly correlated for 188/240 features when comparing di with diii, but for only 20 when comparing di with dii , and nine when comparing dii with diii. Furthermore, when using di or diii, texture indices reflected tumor heterogeneity as assessed visually by experts. Last, 41 features presented statistically significant differences between contralateral WM regions when ROI size slightly varies across patients, and none when using ROI of the same size. For regions with similar size, 224 features were significantly different between WM and tumor. Valuable information from texture indices can be biased by methodological choices. Recommendations are to standardize intensities in MR brain volumes, to use intensity binning with constant bin width, and to define regions with the same volumes to get reliable textural indices.
AB - Few methodological studies regarding widely used textural indices robustness in MRI have been reported. In this context, this study aims to propose some rules to compute reliable textural indices from multimodal 3D brain MRI. Diagnosis and post-biopsy MR scans including T1, post-contrast T1, T2 and FLAIR images from thirty children with diffuse intrinsic pontine glioma (DIPG) were considered. The hybrid white stripe method was adapted to standardize MR intensities. Sixty textural indices were then computed for each modality in different regions of interest (ROI), including tumor and white matter (WM). Three types of intensity binning were compared di: constant bin width and relative bounds; dii : constant number of bins and relative bounds; diii : constant number of bins and absolute bounds. The impact of the volume of the region was also tested within the WM. First, the mean Hellinger distance between patient-based intensity distributions decreased by a factor greater than 10 in WM and greater than 2.5 in gray matter after standardization. Regarding the binning strategy, the ranking of patients was highly correlated for 188/240 features when comparing di with diii, but for only 20 when comparing di with dii , and nine when comparing dii with diii. Furthermore, when using di or diii, texture indices reflected tumor heterogeneity as assessed visually by experts. Last, 41 features presented statistically significant differences between contralateral WM regions when ROI size slightly varies across patients, and none when using ROI of the same size. For regions with similar size, 224 features were significantly different between WM and tumor. Valuable information from texture indices can be biased by methodological choices. Recommendations are to standardize intensities in MR brain volumes, to use intensity binning with constant bin width, and to define regions with the same volumes to get reliable textural indices.
KW - 3D MRI
KW - diffuse intrinsic pontine glioma
KW - radiomics
KW - texture analysis
UR - http://www.scopus.com/inward/record.url?scp=85047967277&partnerID=8YFLogxK
U2 - 10.1088/1361-6560/aabd21
DO - 10.1088/1361-6560/aabd21
M3 - Article
C2 - 29633962
AN - SCOPUS:85047967277
SN - 0031-9155
VL - 63
JO - Physics in Medicine and Biology
JF - Physics in Medicine and Biology
IS - 10
M1 - 105003
ER -