TY - JOUR
T1 - Hyper-AdaC
T2 - 2nd Machine Learning for Health Symposium, ML4H 2022
AU - Benkirane, Hakim
AU - Vakalopoulou, Maria
AU - Christodoulidis, Stergios
AU - Garberis, Ingrid Judith
AU - Michiels, Stefan
AU - Cournede, Paul Henry
N1 - Publisher Copyright:
© 2022 P.N. Argaw, E. Healey & I.S. Kohane.
PY - 2022/1/1
Y1 - 2022/1/1
N2 - The emergence of deep learning in the medical field has popularized the development of models to predict survival outcomes from histopathology images in precision oncology. Graph-based formalism has opened interesting perspectives for generating informative representations, as they can be context-Aware and model local and global topological structures in the tumor's microenvironment. However, the critical issue in using graph representations lies in their generalizability. They can suffer from overfitting due to their large sizes or high discrepancies between nodes due to random sampling from WSI. In addition, standard graph formulations are limited to pairwise interactions, which can sometimes fail to represent the reality observed in histopathology and hinder the interpretability of those interactions. In this work, we present Hyper-AdaC, an adaptive clustering-based hypergraph representation to model highorder correlations among different regions of the WSIs while being compact enough to help graph neural networks generalize in the case of survival prediction. We evaluate our approach on 5 different public available cancer datasets. Our method outperforms most state-of-The-Art graph-based methods for survival prediction with WSIs, creating a more efficient and robust alternative to other graph representations. Moreover, due to our formulation, attention maps are depicted at different resolutions depending on the tissue characteristics of each WSI. The code is available at: https://github. com/HakimBenkirane/Hyper-AdaC.
AB - The emergence of deep learning in the medical field has popularized the development of models to predict survival outcomes from histopathology images in precision oncology. Graph-based formalism has opened interesting perspectives for generating informative representations, as they can be context-Aware and model local and global topological structures in the tumor's microenvironment. However, the critical issue in using graph representations lies in their generalizability. They can suffer from overfitting due to their large sizes or high discrepancies between nodes due to random sampling from WSI. In addition, standard graph formulations are limited to pairwise interactions, which can sometimes fail to represent the reality observed in histopathology and hinder the interpretability of those interactions. In this work, we present Hyper-AdaC, an adaptive clustering-based hypergraph representation to model highorder correlations among different regions of the WSIs while being compact enough to help graph neural networks generalize in the case of survival prediction. We evaluate our approach on 5 different public available cancer datasets. Our method outperforms most state-of-The-Art graph-based methods for survival prediction with WSIs, creating a more efficient and robust alternative to other graph representations. Moreover, due to our formulation, attention maps are depicted at different resolutions depending on the tissue characteristics of each WSI. The code is available at: https://github. com/HakimBenkirane/Hyper-AdaC.
KW - Histopathology
KW - Hypergraphs
KW - Interpretability
KW - Representation Learning
KW - Survival Analysis
UR - http://www.scopus.com/inward/record.url?scp=85161916223&partnerID=8YFLogxK
M3 - Conference article
AN - SCOPUS:85161916223
SN - 2640-3498
VL - 193
SP - 405
EP - 418
JO - Proceedings of Machine Learning Research
JF - Proceedings of Machine Learning Research
Y2 - 28 November 2022
ER -