TY - JOUR
T1 - Proteomics Standards Initiative at Twenty Years
T2 - Current Activities and Future Work
AU - Deutsch, Eric W.
AU - Vizcaíno, Juan Antonio
AU - Jones, Andrew R.
AU - Binz, Pierre Alain
AU - Lam, Henry
AU - Klein, Joshua
AU - Bittremieux, Wout
AU - Perez-Riverol, Yasset
AU - Tabb, David L.
AU - Walzer, Mathias
AU - Ricard-Blum, Sylvie
AU - Hermjakob, Henning
AU - Neumann, Steffen
AU - Mak, Tytus D.
AU - Kawano, Shin
AU - Mendoza, Luis
AU - Van Den Bossche, Tim
AU - Gabriels, Ralf
AU - Bandeira, Nuno
AU - Carver, Jeremy
AU - Pullman, Benjamin
AU - Sun, Zhi
AU - Hoffmann, Nils
AU - Shofstahl, Jim
AU - Zhu, Yunping
AU - Licata, Luana
AU - Quaglia, Federica
AU - Tosatto, Silvio C.E.
AU - Orchard, Sandra E.
N1 - Publisher Copyright:
© 2023 The Authors. Published by American Chemical Society.
PY - 2023/2/3
Y1 - 2023/2/3
N2 - The Human Proteome Organization (HUPO) Proteomics Standards Initiative (PSI) has been successfully developing guidelines, data formats, and controlled vocabularies (CVs) for the proteomics community and other fields supported by mass spectrometry since its inception 20 years ago. Here we describe the general operation of the PSI, including its leadership, working groups, yearly workshops, and the document process by which proposals are thoroughly and publicly reviewed in order to be ratified as PSI standards. We briefly describe the current state of the many existing PSI standards, some of which remain the same as when originally developed, some of which have undergone subsequent revisions, and some of which have become obsolete. Then the set of proposals currently being developed are described, with an open call to the community for participation in the forging of the next generation of standards. Finally, we describe some synergies and collaborations with other organizations and look to the future in how the PSI will continue to promote the open sharing of data and thus accelerate the progress of the field of proteomics.
AB - The Human Proteome Organization (HUPO) Proteomics Standards Initiative (PSI) has been successfully developing guidelines, data formats, and controlled vocabularies (CVs) for the proteomics community and other fields supported by mass spectrometry since its inception 20 years ago. Here we describe the general operation of the PSI, including its leadership, working groups, yearly workshops, and the document process by which proposals are thoroughly and publicly reviewed in order to be ratified as PSI standards. We briefly describe the current state of the many existing PSI standards, some of which remain the same as when originally developed, some of which have undergone subsequent revisions, and some of which have become obsolete. Then the set of proposals currently being developed are described, with an open call to the community for participation in the forging of the next generation of standards. Finally, we describe some synergies and collaborations with other organizations and look to the future in how the PSI will continue to promote the open sharing of data and thus accelerate the progress of the field of proteomics.
KW - Human Proteome Organization
KW - Proteomics Standards Initiative
KW - mass spectrometry
KW - molecular interactions
KW - proteomics
KW - standards
UR - http://www.scopus.com/inward/record.url?scp=85146633740&partnerID=8YFLogxK
U2 - 10.1021/acs.jproteome.2c00637
DO - 10.1021/acs.jproteome.2c00637
M3 - Review article
C2 - 36626722
AN - SCOPUS:85146633740
SN - 1535-3893
VL - 22
SP - 287
EP - 301
JO - Journal of Proteome Research
JF - Journal of Proteome Research
IS - 2
ER -