The mzIdentML data standard for mass spectrometry-based proteomics results

Andrew R. Jones; Martin Eisenacher; Gerhard Mayer; Oliver Kohlbacher; Jennifer Siepen; Simon J. Hubbard; Julian N. Selley; Brian C. Searle; James Shofstahl; Sean L. Seymour; Randall Julian; Pierre Alain Binz; Eric W. Deutsch; Henning Hermjakob; Florian Reisinger; Johannes Griss; Juan Antonio Vizcaíno; Matthew Chambers; Angel Pizarro; David Creasy

doi:10.1074/mcp.M111.014381

The mzIdentML data standard for mass spectrometry-based proteomics results

Andrew R. Jones, Martin Eisenacher, Gerhard Mayer, Oliver Kohlbacher, Jennifer Siepen, Simon J. Hubbard, Julian N. Selley, Brian C. Searle, James Shofstahl, Sean L. Seymour, Randall Julian, Pierre Alain Binz, Eric W. Deutsch, Henning Hermjakob, Florian Reisinger, Johannes Griss, Juan Antonio Vizcaíno, Matthew Chambers, Angel Pizarro, David Creasy

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166 Citations (Scopus)

Résumé

We report the release of mzIdentML, an exchange standard for peptide and protein identification data, designed by the Proteomics Standards Initiative. The format was developed by the Proteomics Standards Initiative in collaboration with instrument and software vendors, and the developers of the major open-source projects in proteomics. Software implementations have been developed to enable conversion from most popular proprietary and open-source formats, and mzIdentML will soon be supported by the major public repositories. These developments enable proteomics scientists to start working with the standard for exchanging and publishing data sets in support of publications and they provide a stable platform for bioinformatics groups and commercial software vendors to work with a single file format for identification data.

langue originale	Anglais
journal	Molecular and Cellular Proteomics
Volume	11
Numéro de publication	7
Les DOIs	https://doi.org/10.1074/mcp.M111.014381
état	Publié - 1 juil. 2012
Modification externe	Oui

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10.1074/mcp.M111.014381

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Jones, A. R., Eisenacher, M., Mayer, G., Kohlbacher, O., Siepen, J., Hubbard, S. J., Selley, J. N., Searle, B. C., Shofstahl, J., Seymour, S. L., Julian, R., Binz, P. A., Deutsch, E. W., Hermjakob, H., Reisinger, F., Griss, J., Vizcaíno, J. A., Chambers, M., Pizarro, A., & Creasy, D. (2012). The mzIdentML data standard for mass spectrometry-based proteomics results. Molecular and Cellular Proteomics, 11(7). https://doi.org/10.1074/mcp.M111.014381

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title = "The mzIdentML data standard for mass spectrometry-based proteomics results",

abstract = "We report the release of mzIdentML, an exchange standard for peptide and protein identification data, designed by the Proteomics Standards Initiative. The format was developed by the Proteomics Standards Initiative in collaboration with instrument and software vendors, and the developers of the major open-source projects in proteomics. Software implementations have been developed to enable conversion from most popular proprietary and open-source formats, and mzIdentML will soon be supported by the major public repositories. These developments enable proteomics scientists to start working with the standard for exchanging and publishing data sets in support of publications and they provide a stable platform for bioinformatics groups and commercial software vendors to work with a single file format for identification data.",

author = "Jones, {Andrew R.} and Martin Eisenacher and Gerhard Mayer and Oliver Kohlbacher and Jennifer Siepen and Hubbard, {Simon J.} and Selley, {Julian N.} and Searle, {Brian C.} and James Shofstahl and Seymour, {Sean L.} and Randall Julian and Binz, {Pierre Alain} and Deutsch, {Eric W.} and Henning Hermjakob and Florian Reisinger and Johannes Griss and Vizca{\'i}no, {Juan Antonio} and Matthew Chambers and Angel Pizarro and David Creasy",

year = "2012",

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Jones, AR, Eisenacher, M, Mayer, G, Kohlbacher, O, Siepen, J, Hubbard, SJ, Selley, JN, Searle, BC, Shofstahl, J, Seymour, SL, Julian, R, Binz, PA, Deutsch, EW, Hermjakob, H, Reisinger, F, Griss, J, Vizcaíno, JA, Chambers, M, Pizarro, A & Creasy, D 2012, 'The mzIdentML data standard for mass spectrometry-based proteomics results', Molecular and Cellular Proteomics, VOL. 11, Numéro 7. https://doi.org/10.1074/mcp.M111.014381

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T1 - The mzIdentML data standard for mass spectrometry-based proteomics results

AU - Jones, Andrew R.

AU - Eisenacher, Martin

AU - Mayer, Gerhard

AU - Kohlbacher, Oliver

AU - Siepen, Jennifer

AU - Hubbard, Simon J.

AU - Selley, Julian N.

AU - Searle, Brian C.

AU - Shofstahl, James

AU - Seymour, Sean L.

AU - Julian, Randall

AU - Binz, Pierre Alain

AU - Deutsch, Eric W.

AU - Hermjakob, Henning

AU - Reisinger, Florian

AU - Griss, Johannes

AU - Vizcaíno, Juan Antonio

AU - Chambers, Matthew

AU - Pizarro, Angel

AU - Creasy, David

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